Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015818197.1_cds_XP_016499527.1_13443
CDS Infomation

[gene=LOC107818101] [db_xref=GeneID:107818101] [protein=nuclear pore complex protein NUP1-like] [protein_id=XP_016499527.1] [location=join(18721..18991,20388..20434,21233..21348,22071..22263,22384..22686,22773..22859,22993..23631,24100..24461,26443..26678,26767..27054,27091..27525,30024..30154)] [gbkey=CDS]
Sequence

ATGGCAACGGCGGGCGACGGCACGGAGACGGCGGCAGCATACGAAGGAGGAGGAGCCGGA
GGAAAGTTTAGGAAAAGGCCGTTACGTCGGAACCAGAATAATACTCCGTACGATCGTCCA
CCGACGGCACTTCGAAACTCTAGTTGGCTTACTAAGCTCGTGGTGGACCCCGCATCAAAG
CTCATAACTTCCGGCGCTCAACGCTTCTTTTCCTCCATATTCCAAAAGCGCCTTCCCCCT
TCCCCCACGCCATTACCTCCACCTCCTCCAGGACCAAGCCAAGAATCAAAGGATCTGCGT
CAGGAGTCAAGTCCCAATGAGTATACTGGAGCACTAGTGATGGCAGGACAAGGAGATGAC
CATGCTGCATGCAGCTTGGGGGACGACACATTCTCAGAGCTTGAGCAGCTGTTGAAACAG
AAGACATTTACAAGATCTGAGATTAATCGCTTGACAGAACTTTTGCGCTCAAAAGCTGCA
GACGTGCCTATGGGAGATGAGGAGAAAAGAGCCGAGGCCATTCTATCTAGACATGCATTG
GATTCTTCGAGCCGCTTGATGGAAGGAAATAGGTCTGTGAAGGTTACATCCGGTGGAGTT
GTCGCAATTCCTGTCACGAATTCCAGGATTCTTGAAGATGATATTGCATCCCCTGCTGAG
CTTGCAAAAGCTTACATGGGGAGTAGGTCATCAAAGGTGTCGCCATCAATGCTGAGCACG
CGTAGTCAAGCTGTGAGAGAAGATACACCTCTGCTAAGAAATGTACAGTATGTCCAAAAA
TCACCTCTTCCATCAGCAACAACTAGGACTGCTGGTCTTCTCGGGGTTCGAGAGAATGAG
TTTACTACTCCAAGATCTCATGGAAGATCTGCTATATACAGCATGGCTCGTACGCCATAC
TCTAGAGTTCGTCAAACTGAGGTTCAGAAGGCTACCAGCTTGACAAATTATGTCAATGGT
GGGTGTTCATCATCTAGGTCAGTGTCGGAGCACGATGTACTTTTTGGGTCTAAACAGGCC
CTTAAACGAAGAAGCTATGTTCTGGATGATGATCTTGGATCTGTTGGTCCCATGCGTAGG
ATTAGGCAGAAACCTAATCTTCTATCTTTTGGAGTTTCACGTCCCAGTGCTGGAGTTGCT
TCAGCCAGCAACCTGCATCCGGAGGTATCAAAAGTTGTTGGAGATGTCCAAGATAATAAA
ACCACGCCTACAAGGCATATTGCCGTTCCTCCAAAGTCCAGTGAGACTGCTGCAAAGATA
TTGAAGCATCTCGAAAAGATGACCCCAAAGGGAAAATCATCAGAATCCAAATTAGCTGCA
GGGAAAGAGAATAAACTGACACCGAACATGCTTCATGGACGAGCTCTTAGAAGCTTGGAG
GATTTGGATTCACCCAAGCTGCTGCAGAGCGCACACGATAGCTATAAGCTGGAGAACTGG
TCTAAAATATTTCCTCCCAATCCCCGTGAACCGAAGCAAGGGGAAATTGAACAAAATGGG
CGTAGTTCTGCTAGCGAGTCAGCTGCTAAAGGAAAAAACGACACAATCTTTTCATTTAAA
GATACTCAACCCACTGTTGAAACCAATTCCACGGTAAACAAGTCTGCTACTCAACCTCCT
CCCAAGAAACTAGCTTTTAAGATGAGTGCACACGAGGATTCTTTTGAGCTAGAAGAGGAC
ATAAACTCTAATGGGCCTTCATCTCAATTAGCTGAAGGGAGAGGGAAGCTGGAAATATCT
GCTGCGGACCAGAAGCCATTATGTGCTGCTGAACCCACGAGCAAACCTGCTGCTTTGCTG
GAAGTAAGGACACCTTCTGGTGTTTTAGGCAAAAAATCTGATACAGAGACTCCTGATAGT
GGTGCCACCGCTGTCAAGAACACCATTTTCCTGCCTATTGCAGGTTCCCAATCAATAGAA
ACGGTGTCTAACAAGGAGACAAGTGTTGACAAGGTTCCACCATTTGTATTTTCGTCATCA
ACCCAAGTCACTGGGTCAAAGCCAGGTAGCTCGAGCAGCGTATCCAATCTAGCGTCCAGC
CCAACTGATGCTCGGCCTAATCCTTTTCAGCTGGATAACTCACAGAAGGCTGTGGACAGC
AATGGCAAATTAGAAGCATTATCATCTGGTCCATCAAGTTCAATATCAACAAGTGGTATT
TTCTCATTAGGTGCTCCATCCAGTACTTCAAGTTTAAGTAATGGACTATTTGCTCCTAGT
CCTGCTATCTCAACCACCTCTGCCTTGTTGTCAGGCAGCTCTACCGCTTCCGCGAGCAGT
CTCTTTGGTTCCAGTGCAGCATCCTCAGTTTCCAAGGAACCTCCTATCAAATTTGGTTTT
TTTGGAGTTCCTTCAGAAACAGTTTCAGCACCATCAACAACTTCCACCGCAGAAACTACA
GACGTGAAAGCCAAATCCGAGACTGGAACTACTTTTGGCAATTTGAAGAGTTCACCTTTT
GTGGTTGCGTCTTTTGCAGCTACAGGCTCTGGAAATAGTATCTCTGGTTTTAGTTCATCA
GTAATGTCAGTGGTTACTGCAGGAGGTGAATCACTTGTTAGTGCACAGTCTCAGGGTTCT
GTTTTTAGTACAGGAGGTGAATCACTTGTTAGTGCACAGACTTCTGTTGCTGGATCTGGC
ACTTCTGTCGTCTCTGGGAGCATGCCTGCTCATTTCGGTTCATCACCATCCATAGCAAAC
TTTCCCGTGTTTGGTTCTGCGCCTGGTACTACTGGCCAAGTTTCTGCTTCTCCTTCGAAA
AACAACCTAGTTGGCACCAGCAATGCTGCTTCTGGAATATTTAATTTTGGTGCTAGTTCG
TCAGCTTCCAGTGCAGCAGGCAGGTTAACTGGGTCTATAAATGGCACGGCCCCGTTGGCA
TTTGCTTTTAGTGCCAGTTCTGCAGCTCCTGCTTCGGAAACCAGTGTACCTGCCACCTCC
AGCAGCGCTACTCCTGGGACATTCAATTTTGGTGGTAGCGACGCTATGGTCGCTTCTCGC
GACACTGTCGCCTCTCGCCACGCAGGCAGAGGCGAGCGCTATTTCGAAACGCAACGCAAC
AGAGGCTCTGTGGCGACACTGTCTCGCCTCGCCTCGCCTCAGTGCTAA

Peptide Sequence

PEP ID

XP_016499527.1
PEP Infomation

PREDICTED: nuclear pore complex protein NUP1-like [Nicotiana tabacum]
Sequence

MATAGDGTETAAAYEGGGAGGKFRKRPLRRNQNNTPYDRPPTALRNSSWLTKLVVDPASK
LITSGAQRFFSSIFQKRLPPSPTPLPPPPPGPSQESKDLRQESSPNEYTGALVMAGQGDD
HAACSLGDDTFSELEQLLKQKTFTRSEINRLTELLRSKAADVPMGDEEKRAEAILSRHAL
DSSSRLMEGNRSVKVTSGGVVAIPVTNSRILEDDIASPAELAKAYMGSRSSKVSPSMLST
RSQAVREDTPLLRNVQYVQKSPLPSATTRTAGLLGVRENEFTTPRSHGRSAIYSMARTPY
SRVRQTEVQKATSLTNYVNGGCSSSRSVSEHDVLFGSKQALKRRSYVLDDDLGSVGPMRR
IRQKPNLLSFGVSRPSAGVASASNLHPEVSKVVGDVQDNKTTPTRHIAVPPKSSETAAKI
LKHLEKMTPKGKSSESKLAAGKENKLTPNMLHGRALRSLEDLDSPKLLQSAHDSYKLENW
SKIFPPNPREPKQGEIEQNGRSSASESAAKGKNDTIFSFKDTQPTVETNSTVNKSATQPP
PKKLAFKMSAHEDSFELEEDINSNGPSSQLAEGRGKLEISAADQKPLCAAEPTSKPAALL
EVRTPSGVLGKKSDTETPDSGATAVKNTIFLPIAGSQSIETVSNKETSVDKVPPFVFSSS
TQVTGSKPGSSSSVSNLASSPTDARPNPFQLDNSQKAVDSNGKLEALSSGPSSSISTSGI
FSLGAPSSTSSLSNGLFAPSPAISTTSALLSGSSTASASSLFGSSAASSVSKEPPIKFGF
FGVPSETVSAPSTTSTAETTDVKAKSETGTTFGNLKSSPFVVASFAATGSGNSISGFSSS
VMSVVTAGGESLVSAQSQGSVFSTGGESLVSAQTSVAGSGTSVVSGSMPAHFGSSPSIAN
FPVFGSAPGTTGQVSASPSKNNLVGTSNAASGIFNFGASSSASSAAGRLTGSINGTAPLA
FAFSASSAAPASETSVPATSSSATPGTFNFGGSDAMVASRDTVASRHAGRGERYFETQRN
RGSVATLSRLASPQC

Transcript Sequence

Gene sequence data has not been registered.